PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_15030_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 211aa    MW: 23584.4 Da    PI: 5.5113
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_15030_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2621.4e-1975124355
                                   AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                           y+GVr+++ +g+++AeIrd + ng   r++lg+f++aeeAa a+++a+ +++g
  cra_locus_15030_iso_1_len_1003_ver_3  75 YRGVRRRP-WGKYAAEIRDSTRNG--IRVWLGTFDSAEEAALAYDQAAFSMRG 124
                                           9*******.**********44465..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.72E-3173133No hitNo description
PROSITE profilePS5103223.06474132IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-2374134IPR016177DNA-binding domain
SMARTSM003801.6E-3774138IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-3074132IPR001471AP2/ERF domain
PRINTSPR003671.1E-107586IPR001471AP2/ERF domain
PfamPF008473.7E-1475124IPR001471AP2/ERF domain
PRINTSPR003671.1E-1098114IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MQPSFSWDDV LPFNFNDSED MFLLDVLSEV VRESSDTNSS SSAAAAAASA SSINKEEEVT  60
SNIKFKGGAK KEQNYRGVRR RPWGKYAAEI RDSTRNGIRV WLGTFDSAEE AALAYDQAAF  120
SMRGSMAVLN FPIEIVKESL REMKFKCGSE DGCSPVVELK KRHSSMKKKS GKNRKNRGRE  180
LLSENVVVFE DLGAEYLEEL LNSSEINMGN R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2971135266ATERF1
3gcc_A1e-2971135266ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010262305.18e-72PREDICTED: ethylene-responsive transcription factor 1B-like
RefseqXP_015087506.12e-72PREDICTED: ethylene-responsive transcription factor 1B
SwissprotQ8LDC83e-65ERF92_ARATH; Ethylene-responsive transcription factor 1B
TrEMBLD8VD373e-81D8VD37_ACTDE; Ethylene response factor 10
STRINGVIT_07s0005g03230.t013e-70(Vitis vinifera)
STRINGVIT_07s0005g03260.t013e-70(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165